2601 (Lhca2) Chloroa_b-bindThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
2601	chr_2	(Lhca2) Chloroa_b-bind	1393264	1394016	+	Chloroa_b-bind

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446639	Thaps2601.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0022

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0218	0.15	610 9100

Most Highly Correlated Transcripts

bd1820 (bd1820) Fasciclin 0.9968	bd1160 (bd1160) Chloroa_b-bind superfamily 0.9923	26246 (Lhcr3) fucoxanthin chl a/c light-harvesting protein 0.987	270210 (PsbO) oxygen-evolving enhancer protein 1 precursor 0.9866	bd218 (bd218) Chloroa_b-bind superfamily 0.985	24080 (Lhcr1) fucoxanthin chl a/c light-harvesting protein, lhcr type 0.9835
25402 (Lhcf10) fucoxanthin chl a/c light-harvesting protein, major type 0.9789	34830 MSP superfamily 0.9782	270241 (Lhcf11) fucoxanthin-chlorophyll a-c binding protein, plastid precursor 0.978	22747 (Lhcr10) fucoxanthin chlorophyll a/c light-harvesting protein 0.9777

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	cl02879	117.793	8.30E-33	83 - 219	specific	249913
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	117.793	8.30E-33	83 - 219	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_6062	PHATRDRAFT_6062	271559	307175	Not available	Not available	AT1G19150.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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