262258 P_permeaseThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
262258	chr_4	P_permease	1685088	1688670	+	P_permease

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443732	Thaps262258.6, Thaps262258.4, Thaps262258.3, Thaps262258.2, Thaps262258.5, Thaps262258.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0209	0.34	0.96 2100

Most Highly Correlated Transcripts

32716 PRK05290 0.7683	5119 MATE_like superfamily 0.7594	11101 TauE 0.7423	11984 hypothetical protein 0.7358	20661 hypothetical protein 0.7194	bd722 (bd722) NA 0.7193
2058 hypothetical protein 0.7125	7796 ANK 0.701	4066 hypothetical protein 0.6979	3228 hypothetical protein 0.6937

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
P_permease		Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for...	cl17221	374.281	6.98E-119	635 - 1060	specific	238536
ArsB_NhaD_permease superfamily		Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate,...	-	374.281	6.98E-119	635 - 1060	superfamily	266565
CitMHS		Citrate transporter; Citrate transporter.	-	142.02	3.20E-36	635 - 1007	multi-dom	252049

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44788	PHATRDRAFT_44788	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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