262537 (SELB) SelB_euk
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262537 chr_5 (SELB) SelB_euk 1262366 1266262 + SelB_euk

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0458

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0021
 0.47

Most Highly Correlated Transcripts

6028

NA
0.8774

269624

TIM_phosphate_binding superfamily
0.8703

267979

HCO3_cotransp superfamily
0.8642

261400

NA
0.8522

bd1091

(bd1091) NA
0.8518

40200

TRX_reduct
0.8503

41655

Chloroa_b-bind
0.8456

13393

PLN02321
0.845

268443

SAICAR_synt_Sc
0.8449

262977

NA
0.8445

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SelB_euk SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; SelB is... cl17170 262.687 6.71E-81 274 - 465 specific 206676
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 262.687 6.71E-81 274 - 465 superfamily 266525
selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of... cl02787 107.563 3.05E-27 491 - 573 specific 239667
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 107.563 3.05E-27 491 - 573 superfamily 261449

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8917 PHATRDRAFT_8917 212910 163005 312073 Cre06.g259200.t1.1 Not available 518545

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

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