263072 PcnB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263072 chr_7 PcnB 256635 259230 + PcnB

Synonyms

NCBI ID Ensembl Genomes exon ID
7446620 Thaps263072.1, Thaps263072.3, Thaps263072.4, Thaps263072.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0292

Most Highly Correlated Transcripts

bd894

(bd894) Peptidase_M14_like superfamily
0.9134

35095

TPR
0.891

12836

EEP superfamily
0.8903

263997

(APA1) Adaptin_N
0.8852

bd1465

(bd1465) PKc_like superfamily
0.8837

263663

RPE65
0.8766

6459

Spc97_Spc98
0.875

26140

PRP8
0.8652

264001

COG1233
0.8637

23386

LsmAD
0.8631

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; CCA-adding enzymes add the... cl11966 124.242 7.78E-33 274 - 411 specific 143388
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 124.242 7.78E-33 274 - 411 superfamily 264491
PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis] - 170.666 1.39E-46 274 - 736 multi-dom 223690

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48911 PHATRDRAFT_48911 192599 68937 Not available Not available AT1G22660.1 522402

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0016779 GO:0004810 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0016779

nucleotidyltransferase activity

Details: 
Catalysis of the transfer of a nucleotidyl group to a reactant.
GO Category: 
MF

GO:0004810

tRNA adenylyltransferase activity

Details: 
Catalysis of the reaction: ATP + tRNA(n) = diphosphate + tRNA(n+1).
GO Category: 
MF

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