263277 S2P-M50_like_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263277 chr_7 S2P-M50_like_2 1722403 1723596 - S2P-M50_like_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7450585 Thaps263277.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0317

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0023
 0.43

Most Highly Correlated Transcripts

bd467

(bd467) Cytochrome_b_N
0.9039

bd1304

(bd1304) Ycf4
0.9019

bd466

(bd466) cytochrome_b_C
0.8985

bd1387

(bd1387) psbE
0.8937

bd1342

(bd1342) psaL
0.8881

bd2088

(bd2088) rbcL
0.8792

bd1378

(bd1378) atpI
0.878

bd1820

(bd1820) Fasciclin
0.8735

bd1350

(bd1350) psaF
0.8716

bd1441

(bd1441) ccsA
0.8702

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which... cl10020 98.8414 1.42E-24 164 - 295 specific 100081
S2P-M50 superfamily Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane... - 98.8414 1.42E-24 164 - 295 superfamily 245232

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49052 PHATRDRAFT_49052 188763 158742 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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