263480 COG4770
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263480 chr_9 COG4770 102956 105706 - COG4770

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0130

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0264
 0.37

Most Highly Correlated Transcripts

26769

ERG4_ERG24 superfamily
0.908

264157

CBS_pair superfamily
0.898

32789

(PCC1) COG4799
0.8918

269328

(PCB1) COG4799
0.8904

29322

AAT_I superfamily
0.8799

31317

(UGDH2) Ugd
0.8757

4909

hypothetical protein
0.8702

21690

hypothetical protein
0.87

23830

(GCD1) GCD
0.8699

20753

PDI_a_family
0.8694

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-... cl11404 85.1603 8.20E-20 728 - 794 specific 133459
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 85.1603 8.20E-20 728 - 794 superfamily 264355
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 218.71 1.27E-65 225 - 445 superfamily 266590
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 167.275 1.20E-48 112 - 219 superfamily 249744
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 167.275 1.20E-48 112 - 219 superfamily 249744
Biotin_carb_C Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... cl08365 127.529 2.36E-34 459 - 575 specific 214878
Biotin_carb_C superfamily Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... - 127.529 2.36E-34 459 - 575 superfamily 263607
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] - 667.073 0 112 - 794 multi-dom 227111

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51245 PHATRDRAFT_51245 136622 209152 Not available Not available AT1G03090.2 352373

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0009374 GO:0005524 GO:0008152 GO:0016874 GO:0004658 -

GO:0009374

biotin binding

Details: 
Interacting selectively and non-covalently with biotin (cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid), the (+) enantiomer of which is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016874

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0004658

propionyl-CoA carboxylase activity

Details: 
Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA.
GO Category: 
MF

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