264184 PLN00049
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264184 chr_14 PLN00049 582547 583957 - PLN00049

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps264184.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0270

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0026
 0.39

Most Highly Correlated Transcripts

7356

Nudix_Hydrolase superfamily
0.8918

3890

COG0398
0.885

264391

MPP_superfamily superfamily
0.8791

4898

hypothetical protein
0.8771

38335

(PSB3) proteasome_beta_type_3
0.8758

4540

hypothetical protein
0.8734

24901

(MTS2_2) PRK11893
0.8697

12899

AAA
0.8658

20696

S_TKc
0.8656

39741

(APM3) AP-3_Mu3_Cterm
0.8643

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41; The C-terminal processing peptidase (... cl02526 187.619 3.24E-56 296 - 461 specific 143476
Peptidase_S41 superfamily C-terminal processing peptidase family S41; Peptidase family S41 (C-terminal processing peptidase... - 187.619 3.24E-56 296 - 461 superfamily 261325
PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in... cl00117 64.5544 5.96E-13 192 - 276 specific 238488
PDZ superfamily PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif).... - 64.5544 5.96E-13 192 - 276 superfamily 260201
PLN00049 carboxyl-terminal processing protease; Provisional - 302.041 1.01E-97 110 - 457 multi-dom 177681

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13331 PHATRDRAFT_13331 184543 204439 315400 Not available AT4G17740.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005515 GO:0006508 GO:0008236 GO:0019132 -

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008236

serine-type peptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0019132

NA

Details: 
NA
GO Category: 
NA

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