264268 REC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264268 chr_15 REC 114475 115796 + REC

Synonyms

NCBI ID Ensembl Genomes exon ID
7441953 Thaps264268.1, Thaps264268.3, Thaps264268.4, Thaps264268.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0196

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0247
 0.36

Most Highly Correlated Transcripts

11490

hypothetical protein
0.9358

23740

DUF72
0.9009

22679

CbiO
0.9

1467

hypothetical protein
0.8931

264827

S_TKc
0.8861

6299

Thr-dehyd
0.886

17582

HAD-SF-IIA-hyp3
0.8858

3500

hypothetical protein
0.8842

262994

COG0637
0.8841

9570

HECTc
0.8838

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... cl19078 110.358 7.73E-30 147 - 268 specific 238088
REC superfamily Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... - 110.358 7.73E-30 147 - 268 superfamily 267431
OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain... - 108.153 9.74E-28 145 - 288 multi-dom 223816

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12051 PHATRDRAFT_12051 Not available 150280 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000156 GO:0000160 GO:0003677 GO:0006355 -

GO:0000156

phosphorelay response regulator activity

Details: 
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
GO Category: 
MF

GO:0000160

phosphorelay signal transduction system

Details: 
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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