264377 (PSB7) proteasome_beta_type_7
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264377 chr_16a (PSB7) proteasome_beta_type_7 363286 364174 + proteasome_beta_type_7

Synonyms

NCBI ID Ensembl Genomes exon ID
7442538 Thaps264377.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0035
 0.44

Most Highly Correlated Transcripts

24318

(PSB_3) proteasome_beta_type_4
0.9084

11068

(PSA6) proteasome_alpha_type_6
0.9005

4318

TIM21 superfamily
0.8944

13448

Sec1
0.8817

40962

(RPN8) PLN03246
0.8799

516

(RPT5) RPT1
0.8784

37585

MECDP_synthase
0.8717

34218

ER_lumen_recept superfamily
0.868

39157

(RPT2) PTZ00361
0.8653

33725

(RPN11) MPN_RPN11_CSN5
0.8638

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the... cl00467 330.313 3.40E-114 53 - 237 specific 239732
Ntn_hydrolase superfamily The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are... - 330.313 3.40E-114 53 - 237 superfamily 260443
PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover,... - 170.556 3.17E-51 49 - 255 multi-dom 223711

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5311 PHATRDRAFT_5311 268646 300236 443432 Cre10.g424400.t1.2 AT3G27430.2 554337

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0004175 GO:0005839 GO:0006511 GO:0004298 GO:0004299 -

GO:0004175

endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
GO Category: 
MF

GO:0005839

proteasome core complex

Details: 
A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
GO Category: 
CC

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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