264420 PseudoU_synth_EcTruA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264420 chr_17 PseudoU_synth_EcTruA 127366 128878 - PseudoU_synth_EcTruA

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0144

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

28413

BglB superfamily
0.8898

20619

hypothetical protein
0.8872

7471

O-FucT_like
0.8799

10925

hypothetical protein
0.8715

262956

WASH-7_mid
0.8687

268929

PLN02885
0.8681

2241

Methyltransf_21
0.8614

2525

MCD superfamily
0.861

22520

RecN
0.8588

21986

hypothetical protein
0.8559

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_EcTruA Eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA; This group consists of... cl00130 235.06 1.33E-75 76 - 340 specific 211337
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 235.06 1.33E-75 76 - 340 superfamily 260207
truA tRNA pseudouridine synthase A; Validated - 227.332 2.06E-72 72 - 340 multi-dom 234577

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46408 PHATRDRAFT_46408 151703 325285 219343 Cre13.g591501.t1.1 AT3G06950.1 293355

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004730 GO:0008033 GO:0009982 GO:0016439 -

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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