264498 PRK00142Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
264498	chr_18	PRK00142	256717	258904	-	PRK00142

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442952	Thaps264498.3, Thaps264498.1, Thaps264498.2, Thaps264498.4, Thaps264498.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0242

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0286	0.31	0.00000006 32

Most Highly Correlated Transcripts

23144 hypothetical protein 0.9215	22385 SAC3_GANP 0.9201	22690 RRM_Nop6 0.906	37928 PLN03238 0.9023	11342 RNA_pol_Rpc4 superfamily 0.9022	21973 G-patch 0.902
261324 PLN02724 0.9008	267979 HCO3_cotransp superfamily 0.9006	38361 HMGB-UBF_HMG-box 0.8972	268136 COG1054 0.8954

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RHOD superfamily		Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese...	-	124.614	5.63E-34	208 - 318	superfamily	260205
PRK00142		putative rhodanese-related sulfurtransferase; Provisional	-	212.4	2.93E-63	17 - 384	multi-dom	234663

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47291	PHATRDRAFT_47291	263999	197994	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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