268327 PseudoU_synth superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268327 chr_2 PseudoU_synth superfamily 1725014 1728250 - PseudoU_synth superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0254
 0.29

Most Highly Correlated Transcripts

262731

hypothetical protein
0.874

40402

SrmB
0.846

586

PTZ00018
0.8303

9061

RNA_pol_B_RPB2 superfamily
0.8292

bd1069

(bd1069) NA
0.8217

19034

HSP70_NBD
0.8177

7771

hypothetical protein
0.8174

38827

DEXDc
0.8126

36650

hypothetical protein
0.8078

12259

COG1204
0.8057

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 136.449 1.44E-37 100 - 358 superfamily 260207
truA tRNA pseudouridine synthase A; Validated - 128.721 8.83E-35 100 - 358 multi-dom 234577

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47345 PHATRDRAFT_47345 180364 153796 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009982 GO:0016439 -

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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