9061 RNA_pol_B_RPB2 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9061	chr_12	RNA_pol_B_RPB2 superfamily	439836	440951	+	RNA_pol_B_RPB2 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445812	Thaps9061.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0232

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0151	0.31	0.00000000045 250

Most Highly Correlated Transcripts

4108 hypothetical protein 0.8888	270222 0.8874	19034 HSP70_NBD 0.8643	993 PROCN superfamily 0.8634	18557 HrpA 0.8428	9384 hypothetical protein 0.841
40402 SrmB 0.8366	17271 FtsJ 0.8338	bd621 (bd621) NA 0.8336	268327 PseudoU_synth superfamily 0.8292

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNA_pol_B_RPB2 superfamily		RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA....	-	140.781	1.45E-36	37 - 278	superfamily	238353

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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