38827 DEXDc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38827 chr_23 DEXDc 83465 85909 - DEXDc

Synonyms

NCBI ID Ensembl Genomes exon ID
7448270 Thaps38827.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0232

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0151
 0.31

Most Highly Correlated Transcripts

bd190

(bd190) SrmB
0.8863

bd1945

(bd1945) NA
0.8736

18557

HrpA
0.8636

bd621

(bd621) NA
0.8616

39812

Sun
0.8498

8336

hypothetical protein
0.8332

bd1876

(bd1876) NatB_MDM20 superfamily
0.8309

bd1807

(bd1807) RRS1 superfamily
0.8308

40402

SrmB
0.8308

36650

hypothetical protein
0.8281

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 93.8416 3.91E-22 492 - 618 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 93.8416 3.91E-22 492 - 618 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 83.1556 2.41E-18 320 - 461 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 83.1556 2.41E-18 320 - 461 superfamily 266587
CarD_TRCF CarD-like/TRCF domain; CarD is a Myxococcus xanthus protein required for the activation of light-... cl00588 75.1823 5.31E-16 127 - 269 specific 215001
CarD_CdnL_TRCF superfamily CarD-like/TRCF domain; CarD is a Myxococcus xanthus protein required for the activation of light-... - 75.1823 5.31E-16 127 - 269 superfamily 260515
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 98.7182 3.55E-23 290 - 484 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30585 PHATRDRAFT_30585 156533 247364 Not available Cre01.g021850.t1.1 AT3G02060.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0006355 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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