268488 Trans_IPPS_HH
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
268488 chr_3 Trans_IPPS_HH 1104366 1105822 + Trans_IPPS_HH
NCBI ID Ensembl Genomes exon ID
7448777 Thaps268488.1, Thaps268488.2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0373
(bd439) POLBc_alpha
0.9042
(bd529) SNF2_N
0.8623
(APA1) Adaptin_N
0.8579
(bd1983) RecA-like_NTPases superfamily
0.8455
(bd1893) NA
0.844
AAA
0.8389
(bd463) Aa_trans superfamily
0.8367
hypothetical protein
0.8353
(bd668) NA
0.8352
(bd718) PRK10387
0.8292
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head; These trans-Isoprenyl Diphosphate Synthases (... cl00210 209.013 5.52E-64 99 - 390 specific 173831
Isoprenoid_Biosyn_C1 superfamily Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (... - 209.013 5.52E-64 99 - 390 superfamily 260263
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13160 PHATRDRAFT_13160 213670 248452 359474 Cre03.g175250.t2.1 AT4G34640.1 Not available
KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110
GO:0009058 GO:0016740 GO:0004310 GO:0008610 GO:0016021 -

biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO Category: 
BP

transferase activity

Details: 
Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO Category: 
MF

farnesyl-diphosphate farnesyltransferase activity

Details: 
Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate.
GO Category: 
MF

lipid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
GO Category: 
BP

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC
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