268596 CBFThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268596	chr_4	CBF	164270	165480	-	CBF

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442043	Thaps268596.2, Thaps268596.1, Thaps268596.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0230	0.24	0.00011 150

Most Highly Correlated Transcripts

bd1667 (bd1667) Mpp10 0.9586	268145 PLN00040 0.9558	bd1709 (bd1709) NA 0.9487	262041 MIF4G 0.9463	268598 COG1094 0.9387	27873 PLN02274 0.9358
29705 18S_RNA_Rcl1p 0.935	2921 RRM_SF 0.932	24715 WD40 superfamily 0.9265	32395 RNA_pol 0.9254

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CBF superfamily		CBF/Mak21 family; CBF/Mak21 family.	-	161.629	1.16E-48	72 - 225	superfamily	252241
CBF superfamily		CBF/Mak21 family; CBF/Mak21 family.	-	161.629	1.16E-48	72 - 225	superfamily	252241

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45888	PHATRDRAFT_45888	203844	178351	114325	Cre01.g068377.t1.1	AT2G17250.1	485830

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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