268986 (dhs1) DS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268986 chr_6 (dhs1) DS 218093 219581 - DS

Synonyms

NCBI ID Ensembl Genomes exon ID
7448382 Thaps268986.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0282

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0265
 0.39

Most Highly Correlated Transcripts

24361

PRK00142
0.8743

35527

PLN02327
0.8705

268543

hypothetical protein
0.8637

bd1749

(bd1749) NA
0.861

bd1803

(bd1803) NA
0.8584

33425

BMS1
0.8412

29018

NMD3
0.8401

36434

DUF1253
0.8387

3135

hypothetical protein
0.8329

21545

hypothetical protein
0.832

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DS Deoxyhypusine synthase; Eukaryotic initiation factor 5A (eIF-5A) contains an unusual amino acid,... cl00826 429.521 8.25E-149 114 - 450 specific 145208
DS superfamily Deoxyhypusine synthase; Eukaryotic initiation factor 5A (eIF-5A) contains an unusual amino acid,... - 429.521 8.25E-149 114 - 450 superfamily 260647

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46999 PHATRDRAFT_46999 230713 186901 315150 Cre01.g018950.t1.2 AT5G05920.1 509984

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008612 GO:0004171 GO:0050983 -

GO:0008612

peptidyl-lysine modification to hypusine

Details: 
The modification of peptidyl-lysine to form hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.
GO Category: 
BP

GO:0004171

NA

Details: 
NA
GO Category: 
NA

GO:0050983

deoxyhypusine biosynthetic process from spermidine

Details: 
The chemical reactions resulting in the formation of deoxyhypusine from spermidine by the enzyme [eIF-5A]-deoxyhypusine synthase. The reaction occurs in four steps: 1. spermidine + NAD+ = dehydrospermidine + NADH + H+; 2. dehydrospermidine + [enzyme]-lysine = 1,3-diaminopropane + [enzyme]-lysine-N6=CH(CH2)3NH2; 3. [enzyme]-lysine-N6=CH(CH2)3NH2 = [eIF-5A]-lysine-N6=CH(CH2)3NH2; 4. [eIF-5A]-lysine-N6=CH(CH2)3NH2 + NADH + H+ = [eIF-5A]-deoxyhypusine + NAD+.
GO Category: 
BP

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