33425 BMS1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33425 chr_4 BMS1 1428255 1432011 + BMS1

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0166
 0.18

Most Highly Correlated Transcripts

bd1709

(bd1709) NA
0.9627

20985

COG5593
0.953

32374

TPR
0.9524

bd1667

(bd1667) Mpp10
0.9483

2772

Utp14
0.9417

36434

DUF1253
0.9373

268735

(GPB1) WD40
0.9346

268130

hypothetical protein
0.934

21082

Cupin_8 superfamily
0.9297

4624

SrmB
0.9243

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BMS1 Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes; Bms1 is an... cl17170 386.695 1.22E-125 48 - 281 specific 206669
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 386.695 1.22E-125 48 - 281 superfamily 266525
DUF663 superfamily Protein of unknown function (DUF663); This family contains several uncharacterized eukaryotic... - 284.642 3.98E-87 671 - 972 superfamily 252898
DUF663 superfamily Protein of unknown function (DUF663); This family contains several uncharacterized eukaryotic... - 284.642 3.98E-87 671 - 972 superfamily 252898
BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and... - 845.561 0 26 - 1137 multi-dom 227519

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42831 PHATRDRAFT_42831 169754 250023 111848 Cre10.g445600.t1.1 AT1G06720.1 467880

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005524 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

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