269160 (gltD) GltD
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269160 chr_6 (gltD) GltD 1557111 1559218 - GltD

Synonyms

NCBI ID Ensembl Genomes exon ID
7442759 Thaps269160.1, Thaps269160.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0383

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0150
 0.38

Most Highly Correlated Transcripts

21640

Iso_dh superfamily
0.9307

268374

(PDHA1) TPP_E1_PDC_ADC_BCADC
0.921

264005

Glyco_hydrolase_16 superfamily
0.9027

22651

hypothetical protein
0.8939

268280

(LAT2) PDHac_trf_mito
0.8817

5080

hypothetical protein
0.8714

264891

Glyco_hydro_30 superfamily
0.8687

bd1709

(bd1709) NA
0.8683

268581

hypothetical protein
0.8676

31818

Mito_carr
0.866

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 93.3562 4.92E-23 1 - 88 superfamily 267455
GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and... - 488.723 9.60E-170 1 - 436 multi-dom 223567

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20342 PHATRDRAFT_20342 207456 323135 449382 Not available Not available 545408

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0005975 GO:0015036 GO:0006537 GO:0016639 GO:0004355 GO:0009342 GO:0045181 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0015036

disulfide oxidoreductase activity

Details: 
Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
GO Category: 
MF

GO:0006537

glutamate biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid.
GO Category: 
BP

GO:0016639

oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0004355

glutamate synthase (NADPH) activity

Details: 
Catalysis of the reaction: 2 L-glutamate + NADP(+) = 2-oxoglutarate + L-glutamine + H(+) + NADPH. This is a two-step reaction: (a) L-glutamate + NH3 = L-glutamine + H2O, (b) L-glutamate + NADP+ + H2O = NH3 + 2-oxoglutarate + NADPH + H+.
GO Category: 
MF

GO:0009342

glutamate synthase complex (NADPH)

Details: 
A complex that possesses glutamate synthase (NADPH) activity.
GO Category: 
CC

GO:0045181

glutamate synthase activity, NAD(P)H as acceptor

Details: 
Catalysis of the reaction: 2 L-glutamate + NAD(P)+ = L-glutamine + 2-oxoglutarate + NAD(P)H + H+.
GO Category: 
MF

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