27435 PAH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
27435 chr_3 PAH 921972 923253 + PAH

Synonyms

NCBI ID Ensembl Genomes exon ID
7444772 Thaps27435.1, Thaps27435.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0261

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0033
 0.48

Most Highly Correlated Transcripts

31437

Peptidase_M16 superfamily
0.9545

264318

(Tp_CCHH25) regulator [Rayko]
0.9482

263786

(ZFP20) zf-TAZ
0.9466

24642

PLN02286
0.9463

262826

DUF3608 superfamily
0.9459

17815

E1_enzyme_family superfamily
0.9443

262152

hypothetical protein
0.9407

33225

MYSc
0.9394

37960

(MYO5) MYSc
0.9376

262171

CAP_ED
0.9363

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.1906 2.86E-14 110 - 156 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.1906 2.86E-14 110 - 156 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.1906 2.86E-14 110 - 156 superfamily 251462
PAH superfamily Paired amphipathic helix repeat; This family contains the paired amphipathic helix repeat. The... - 65.1906 2.86E-14 110 - 156 superfamily 251462

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13057 PHATRDRAFT_13057 157073 295691 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005634 GO:0006355 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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