3098 MCT1_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3098 chr_3 MCT1_N 121196 121984 + MCT1_N

Synonyms

NCBI ID Ensembl Genomes exon ID
7452796 Thaps3098.1, Thaps3098.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0429

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0089
 0.36

Most Highly Correlated Transcripts

21599

NDUFA12 superfamily
0.9285

20945

Tim17
0.9163

24034

hypothetical protein
0.9101

37934

GRX_PICOT_like
0.9083

24725

SEC14
0.906

25040

NA
0.9053

25182

hypothetical protein
0.9042

31113

Cyt_c_Oxidase_VIb
0.9027

3229

hypothetical protein
0.9002

22673

NA
0.8995

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MCT1_N N-terminal domain of multiple copies T cell malignancies 1 and related proteins; This N-terminal... cl16921 113.398 1.97E-32 4 - 86 specific 211422
eIF2D_N_like superfamily N-terminal domain of eIF2D, malignant T cell-amplified sequence 1 and related proteins; This N-... - 113.398 1.97E-32 4 - 86 superfamily 211517
PUA superfamily PUA domain; The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was... - 91.3406 9.28E-24 70 - 186 superfamily 260527

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16787 PHATRDRAFT_16787 191170 65341 253625 Cre50.g761397.t1.1 AT1G09150.1 563407

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

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