36490 (APS2) APS2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36490 chr_10 (APS2) APS2 252074 252610 + APS2

Synonyms

NCBI ID Ensembl Genomes exon ID
7447026 Thaps36490.2, Thaps36490.3, Thaps36490.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0465

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0061
 0.42

Most Highly Correlated Transcripts

262616

(MYB22)
0.8815

6922

hypothetical protein
0.8524

5689

HA
0.8449

20824

hypothetical protein
0.8435

38317

Complex1_LYR_1
0.84

21700

hypothetical protein
0.8385

263599

COG3899
0.8342

9500

hypothetical protein
0.8304

268194

(Tp_Myb4R1b) SANT
0.8226

12960

Vac14_Fig4_bd
0.8219

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] cl02092 181.455 7.32E-59 1 - 142 specific 227363
Clat_adaptor_s superfamily Clathrin adaptor complex small chain; Clathrin adaptor complex small chain. - 181.455 7.32E-59 1 - 142 superfamily 261170

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54935 PHATRDRAFT_54935 224557 292673 429503 Cre07.g324600.t1.2 AT1G47830.1 310806

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0006886 GO:0030125 -

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0030125

clathrin vesicle coat

Details: 
A clathrin coat found on a vesicle.
GO Category: 
CC

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