12960 Vac14_Fig4_bd
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
12960 chr_1 Vac14_Fig4_bd 1687013 1690219 - Vac14_Fig4_bd

Synonyms

NCBI ID Ensembl Genomes exon ID
7451534 Thaps12960.3, Thaps12960.1, Thaps12960.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0475

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0158
 0.37

Most Highly Correlated Transcripts

20666

RabGAP-TBC
0.896

22308

DUF2451 superfamily
0.8948

22141

hypothetical protein
0.8923

6922

hypothetical protein
0.8907

6962

hypothetical protein
0.8898

24235

Peptidase_C19 superfamily
0.889

6068

KH-I
0.8824

22882

PUB
0.8813

23979

zf-HC5HC2H superfamily
0.8758

18530

RNase_HII_bacteria_HII_like
0.8725

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Vac14_Fig4_bd superfamily Vacuolar protein 14 C-terminal Fig4p binding; Vac14 is a scaffold for the Fab1 kinase complex, a... - 234.015 5.11E-71 689 - 895 superfamily 256722
Vac14_Fig4_bd superfamily Vacuolar protein 14 C-terminal Fig4p binding; Vac14 is a scaffold for the Fab1 kinase complex, a... - 234.015 5.11E-71 689 - 895 superfamily 256722
Vac14_Fab1_bd superfamily Vacuolar 14 Fab1-binding region; Vac14 is a scaffold for the Fab1 kinase complex, a complex that... - 185.065 1.70E-54 311 - 407 superfamily 257273
Vac14_Fab1_bd superfamily Vacuolar 14 Fab1-binding region; Vac14 is a scaffold for the Fab1 kinase complex, a complex that... - 185.065 1.70E-54 311 - 407 superfamily 257273

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23224 PHATRDRAFT_23224 227489 296073 427592 Cre16.g670261.t1.1 AT2G01690.1 520183

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments