39802 Peptidase_C19 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39802 chr_3 Peptidase_C19 superfamily 359558 361261 + Peptidase_C19 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7441751 Thaps39802.1, Thaps39802.2, Thaps39802.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0086

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0098
 0.36

Most Highly Correlated Transcripts

270222

0.9971

40962

(RPN8) PLN03246
0.9077

22667

hypothetical protein
0.9007

261400

NA
0.8868

37861

(RPN3) Rpn3_C
0.8782

262513

(RPA2_2) RFA2
0.8764

780

Glf
0.8759

4160

PMT_2 superfamily
0.8756

28028

RPN6
0.8738

269624

TIM_phosphate_binding superfamily
0.8737

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Peptidase_C19 superfamily Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove... - 290.387 1.17E-93 112 - 525 superfamily 261337
UCH Ubiquitin carboxyl-terminal hydrolase; Ubiquitin carboxyl-terminal hydrolase. - 151.792 1.46E-41 110 - 524 multi-dom 249862

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29340 PHATRDRAFT_29340 227090 181578 202168 Cre17.g726050.t1.2 AT1G51710.1 504765

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005975 GO:0004197 GO:0004221 GO:0006511 -

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0004197

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004221

ubiquitin thiolesterase activity

Details: 
Catalysis of the reaction: ubiquitin C-terminal thioester + H2O = ubiquitin + a thiol.
GO Category: 
MF

GO:0006511

ubiquitin-dependent protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
GO Category: 
BP

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