40028 PLN02286
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40028 chr_3 PLN02286 1769240 1771848 + PLN02286

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0235
 0.25

Most Highly Correlated Transcripts

40034

thrS
0.9478

23462

hypothetical protein
0.92

21235

RpsA
0.9163

26726

(ITS2) PLN02843
0.9111

6610

hypothetical protein
0.9062

21858

PRK11819
0.9062

27618

Ribosomal_L10
0.9045

37277

tig
0.8942

ThpsCp110

(rpl6) ribosomal protein L6
0.8914

ThpsCp096

(rpl4) ribosomal protein L4
0.8907

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ArgRS_core catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core... cl00015 238.618 3.07E-73 270 - 550 specific 185675
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 238.618 3.07E-73 270 - 550 superfamily 260139
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 157.761 1.16E-44 590 - 750 superfamily 264512
Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl... cl04104 93.1008 1.51E-22 155 - 238 specific 251994
Arg_tRNA_synt_N superfamily Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl... - 93.1008 1.51E-22 155 - 238 superfamily 262026
PLN02286 arginine-tRNA ligase - 917.879 0 153 - 750 multi-dom 215160

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36013 PHATRDRAFT_36013 185193 217370 426871 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004814 GO:0005524 GO:0006420 GO:0004812 GO:0006418 -

GO:0004814

arginine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006420

arginyl-tRNA aminoacylation

Details: 
The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

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