40713 SodA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40713 chr_5 SodA 861164 862175 - SodA

Synonyms

NCBI ID Ensembl Genomes exon ID
7446448 Thaps40713.2, Thaps40713.1, Thaps40713.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0213

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0245
 0.28

Most Highly Correlated Transcripts

9947

hypothetical protein
0.9258

28334

(GAPD4) PTZ00023
0.9209

21978

hypothetical protein
0.9064

20933

hypothetical protein
0.9034

1011

DSPc superfamily
0.8945

42475

PLN00128
0.8919

8303

Glyco_trans_1_2
0.8908

2553

MDR1
0.8897

31362

(SCS1) PLN00124
0.8828

4783

hypothetical protein
0.8784

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sod_Fe_C superfamily Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the... - 156.682 3.20E-48 132 - 235 superfamily 251524
Sod_Fe_C superfamily Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the... - 156.682 3.20E-48 132 - 235 superfamily 251524
Sod_Fe_N superfamily Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) catalyse... - 143.196 2.29E-43 41 - 122 superfamily 249570
Sod_Fe_N superfamily Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) catalyse... - 143.196 2.29E-43 41 - 122 superfamily 249570
SodA Superoxide dismutase [Inorganic ion transport and metabolism] - 261.047 1.24E-87 41 - 241 multi-dom 223678

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42832 PHATRDRAFT_42832 203256 300378 Not available Cre13.g605150.t1.2 AT3G10920.1 539206

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0004784 GO:0006801 GO:0046872 GO:0004785 GO:0008382 GO:0008383 GO:0016954 -

GO:0004784

superoxide dismutase activity

Details: 
Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
GO Category: 
MF

GO:0006801

superoxide metabolic process

Details: 
The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
GO Category: 
BP

GO:0046872

metal ion binding

Details: 
Interacting selectively and non-covalently with any metal ion.
GO Category: 
MF

GO:0004785

NA

Details: 
NA
GO Category: 
NA

GO:0008382

NA

Details: 
NA
GO Category: 
NA

GO:0008383

NA

Details: 
NA
GO Category: 
NA

GO:0016954

NA

Details: 
NA
GO Category: 
NA

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