41005 odpBThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
41005	chr_6	odpB	840204	841294	-	odpB

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443615	Thaps41005.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0059

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0133	0.40	0.23 130

Most Highly Correlated Transcripts

270304 hypothetical protein 0.9454	bd1306 (bd1306) NA 0.9438	bd1403 (bd1403) NA 0.9333	bd1342 (bd1342) psaL 0.9276	bd2088 (bd2088) rbcL 0.9273	bd1863 (bd1863) NA 0.9196
bd1645 (bd1645) tpt 0.9164	bd1387 (bd1387) psbE 0.9126	270308 hypothetical protein 0.9106	ThpsCt017 (trnG(ucc)) 0.9102

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPP_enzyme_PYR superfamily		Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes; Thiamine...	-	117.964	6.16E-32	1 - 157	superfamily	264357
Transketolase_C superfamily		Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as a...	-	102.294	1.00E-26	186 - 298	superfamily	251527
Transketolase_C superfamily		Transketolase, C-terminal domain; The C-terminal domain of transketolase has been proposed as a...	-	102.294	1.00E-26	186 - 298	superfamily	251527
odpB		pyruvate dehydrogenase E1 component beta subunit; Validated	-	229.626	1.14E-72	1 - 315	multi-dom	177066

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_20360	PHATRDRAFT_20360	263399	240894	417078	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004739 -

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