42283 RabGAP-TBC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42283 chr_13 RabGAP-TBC 948737 951083 + RabGAP-TBC

Synonyms

NCBI ID Ensembl Genomes exon ID
7447896 Thaps42283.3, Thaps42283.2, Thaps42283.4, Thaps42283.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0453

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0248
 0.34

Most Highly Correlated Transcripts

33182

S_TKc
0.8725

10006

UCH
0.8682

8797

hypothetical protein
0.8613

10873

NA
0.8604

2050

hypothetical protein
0.8591

33092

RINGv superfamily
0.859

33039

SpoT
0.8554

262797

Sec7
0.8552

35129

(Tp_Myb2R9) PLN03142
0.8504

8980

hypothetical protein
0.8499

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RabGAP-TBC Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... cl02495 199.903 2.89E-60 1 - 209 specific 249964
RabGAP-TBC superfamily Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... - 199.903 2.89E-60 1 - 209 superfamily 261308
2OG-FeII_Oxy_3 superfamily 2OG-Fe(II) oxygenase superfamily; This family contains members of the 2-oxoglutarate (2OG) and Fe(... - 63.1758 8.44E-12 345 - 519 superfamily 266616

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10479 PHATR_10479 193704 Not available 366181 Cre17.g727450.t1.2 AT3G02460.1 313441

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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