33092 RINGv superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33092	chr_3	RINGv superfamily	1750604	1751836	-	RINGv superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445321	Thaps33092.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0449

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0113	0.35	50 470

Most Highly Correlated Transcripts

261357 NAD_binding_8 superfamily 0.8748	17468 CK_II_beta 0.8678	37336 Beach 0.8651	31737 fabG 0.8625	263124 RRM_snRNP70 0.8614	42283 RabGAP-TBC 0.859
18434 PIPKc superfamily 0.8581	34442 CAP_ED 0.8577	263051 ZntA 0.8568	260784 sec14-like cytosolic factor 0.8544

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RINGv superfamily		RING-variant domain; RING-variant domain.	-	59.2298	1.52E-11	1 - 59	superfamily	266663

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12887	PHATRDRAFT_12887	169414	262815	Not available	Not available	Not available	548638

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

Add comment

Log in to post comments