42621 HisS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42621 chr_17 HisS 100638 102367 + HisS

Synonyms

NCBI ID Ensembl Genomes exon ID
7444171 Thaps42621.2, Thaps42621.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231

Most Highly Correlated Transcripts

40200

TRX_reduct
0.9413

267979

HCO3_cotransp superfamily
0.9246

268443

SAICAR_synt_Sc
0.9242

268068

PTZ00401
0.9188

5053

hypothetical protein
0.9187

42213

PLN02286
0.9157

37187

COG5354
0.9137

36007

Aldolase_II superfamily
0.9123

264345

SpoU
0.9107

35164

acolac_lg
0.9104

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is... cl00268 298.362 2.84E-98 18 - 337 specific 238396
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 298.362 2.84E-98 18 - 337 superfamily 260313
HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS... cl00266 80.6616 1.31E-18 353 - 443 specific 238436
HGTP_anticodon superfamily HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl... - 80.6616 1.31E-18 353 - 443 superfamily 260312
HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] - 355.38 4.84E-118 9 - 442 multi-dom 223202

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16944 PHATRDRAFT_16944 Not available Not available Not available Cre02.g142352.t1.1 AT3G02760.1 559658

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0006412 GO:0004821 GO:0005737 GO:0006427 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0004821

histidine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His).
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0006427

histidyl-tRNA aminoacylation

Details: 
The process of coupling histidine to histidyl-tRNA, catalyzed by histidyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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