9679 ABD superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9679 chr_14 ABD superfamily 71525 73184 - ABD superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451619 Thaps9679.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0432

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0014
 0.46

Most Highly Correlated Transcripts

bd1161

(bd1161) NA
0.8687

22673

NA
0.8634

33199

(TpSec4b) Rab8_Rab10_Rab13_like
0.8614

bd1866

(bd1866) NA
0.8587

9849

SQR_TypeC_SdhC
0.8541

10025

WD40 superfamily
0.854

24759

LRR_RI superfamily
0.8512

3582

Rab6
0.8507

42867

Cytochrom_C1
0.85

7304

hypothetical protein
0.8492

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABD superfamily Alpha-Mannosidase Binding Domain of Atg19/34; These proteins are related to the Alpha-mannosidase (... - 405.208 9.64E-137 93 - 468 superfamily 267410
ManA Phosphomannose isomerase [Carbohydrate transport and metabolism] - 186.736 4.59E-54 93 - 474 multi-dom 224399

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10693 PHATRDRAFT_10693 274588 67532 52642 Cre02.g147650.t1.2 AT1G67070.1 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004476 GO:0005975 GO:0008270 -

GO:0004476

mannose-6-phosphate isomerase activity

Details: 
Catalysis of the reaction: D-mannose 6-phosphate = D-fructose 6-phosphate.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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