6584 PWI superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6584 chr_6 PWI superfamily 1953209 1954817 - PWI superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446362 Thaps6584.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Most Highly Correlated Transcripts

268194

(Tp_Myb4R1b) SANT
0.8749

934

hypothetical protein
0.8629

22918

hypothetical protein
0.8596

263610

COG3899
0.8497

22487

COG5222
0.8458

23979

zf-HC5HC2H superfamily
0.844

23279

Tho2
0.8429

4047

hypothetical protein
0.8403

6143

HSA
0.8392

23096

hypothetical protein
0.8362

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PWI superfamily PWI domain; PWI domain. - 63.8018 1.36E-12 42 - 124 superfamily 261343

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43565 PHATRDRAFT_43565 201108 202757 58282 Not available AT2G29210.1 330130

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

GO:0006397 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

Details: 
Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
GO Category: 
MF

GO:0004600

NA

Details: 
NA
GO Category: 
NA

GO:0030051

NA

Details: 
NA
GO Category: 
NA

GO:0042027

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments