780 GlfThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
780	chr_16a	Glf	237452	238910	-	Glf

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442516	Thaps780.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0216

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0246	0.41	0.00038 0.0025

Most Highly Correlated Transcripts

261126 DadA 0.907	261400 NA 0.8952	18469 FkpA 0.8949	33353 TRX_family 0.8949	22248 PLN00162 0.8866	269110 hypothetical protein 0.8857
36669 TPT 0.8838	269624 TIM_phosphate_binding superfamily 0.8838	31829 CBS_like 0.8787	21211 O-FucT_like 0.8782

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GLF superfamily		UDP-galactopyranose mutase; UDP-galactopyranose mutase.	-	267.446	9.21E-87	256 - 461	superfamily	251844
GLF superfamily		UDP-galactopyranose mutase; UDP-galactopyranose mutase.	-	267.446	9.21E-87	256 - 461	superfamily	251844
NAD_binding_8		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	cl19134	76.7659	2.02E-17	105 - 174	specific	257775
NAD_binding_8 superfamily		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	-	76.7659	2.02E-17	105 - 174	superfamily	267487
Glf		UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	-	409.409	1.32E-139	101 - 477	multi-dom	223636

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	201262	297693	239668	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008767 GO:0009103 -

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