8611 VCBSThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8611	chr_10	VCBS	1074895	1077497	+	VCBS

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450785	Thaps8611.5, Thaps8611.3, Thaps8611.6, Thaps8611.4, Thaps8611.2, Thaps8611.1, Thaps8611.7

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0331

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0275	0.38	19 140000

Most Highly Correlated Transcripts

bd877 (bd877) NA 0.9537	34730 carb_red_sniffer_like_SDR_c 0.8446	22979 hypothetical protein 0.8341	31406 (ARF4) Arl3 0.8294	269151 hypothetical protein 0.8267	bd409 (bd409) Snf7 superfamily 0.8245
24685 Glyco_tranf_GTA_type superfamily 0.8194	23441 Patatin_and_cPLA2 superfamily 0.8168	bd643 (bd643) NA 0.8166	264350 (Tp_CCHH1_Myb2R10) Bromodomain superfamily 0.8083

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VCBS		Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; This domain of about 100...	cl15299	62.2636	4.88E-12	460 - 518	specific	257837
VCBS superfamily		Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; This domain of about 100...	-	62.2636	4.88E-12	460 - 518	superfamily	265667

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	110131	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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