9108 PRP3 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9108 chr_12 PRP3 superfamily 553522 555807 + PRP3 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447555 Thaps9108.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0373

Most Highly Correlated Transcripts

bd1075

(bd1075) NA
0.9446

2622

hypothetical protein
0.9298

bd1100

(bd1100) NA
0.92

28004

hypothetical protein
0.9099

29013

PAP1
0.9042

267979

HCO3_cotransp superfamily
0.8963

26743

IF-2B
0.8908

40200

TRX_reduct
0.8907

4757

Leo1
0.8879

6997

hypothetical protein
0.8861

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRP3 superfamily pre-mRNA processing factor 3 (PRP3); Pre-mRNA processing factor 3 (PRP3) is a U4/U6-associated... - 123.625 9.51E-32 439 - 549 superfamily 254890
DUF1115 superfamily Protein of unknown function (DUF1115); This family represents the C-terminus of hypothetical... - 99.3317 3.54E-24 576 - 729 superfamily 253791
DUF1115 superfamily Protein of unknown function (DUF1115); This family represents the C-terminus of hypothetical... - 99.3317 3.54E-24 576 - 729 superfamily 253791

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34712 PHATRDRAFT_34712 141833 205580 466422 Cre09.g416000.t1.2 AT1G28060.1 321612

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

Not available -

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