9729 COG0398Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9729	chr_14	COG0398	199723	201618	-	COG0398

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448862	Thaps9729.2, Thaps9729.1, Thaps9729.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0138

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0171	0.35	0.00000000000001 1200

Most Highly Correlated Transcripts

270222 0.9232	263399 CypX 0.9016	3483 hypothetical protein 0.9008	5315 hypothetical protein 0.8974	269113 M3_like 0.8881	1762 PRA1 superfamily 0.8876
9274 hypothetical protein 0.8842	1871 hypothetical protein 0.8797	30986 SCO 0.8764	22283 hypothetical protein 0.8763

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
COG0398		Uncharacterized conserved protein [Function unknown]	cl00429	90.4623	1.09E-20	163 - 351	specific	223475
SNARE_assoc superfamily		SNARE associated Golgi protein; This is a family of SNARE associated Golgi proteins. The yeast...	-	90.4623	1.09E-20	163 - 351	superfamily	260418

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_44014	PHATR_44014	212377	166948	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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