bd1039 (bd1039) psbV
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
bd1039 bd_26x41 (bd1039) psbV 57844 58335 + psbV

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0256

Most Highly Correlated Transcripts

ThpsCp005

(psbV) photosystem II cytochrome c550
1

ThpsCp007

(psbX) photosystem II protein X
0.9634

bd2088

(bd2088) rbcL
0.9608

ThpsCt002

(trnR(ccg))
0.9536

ThpsCp009

(rbcL) ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
0.9498

ThpsCt001

(trnM(cau))
0.9452

bd1290

(bd1290) atpH
0.9405

ThpsCp013

(atpH) ATP synthase CF0 C subunit
0.9405

bd794

(bd794) NA
0.9358

bd1378

(bd1378) atpI
0.9347

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
psbV photosystem II cytochrome c550; Validated cl17239 354.761 1.97E-126 1 - 163 specific 177055
psbV superfamily cytochrome c-550; Provisional - 354.761 1.97E-126 1 - 163 superfamily 247793
psbV cytochrome c-550; Provisional - 100.276 8.79E-27 1 - 161 multi-dom 237450

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

Not available -

Add comment

Log in to post comments