15246 NhaPThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
15246	chr_2	NhaP	858126	860723	-	NhaP

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446533	Thaps15246.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0318

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0147	0.38	0.21 17000

Most Highly Correlated Transcripts

35929 (MAPKKK) S_TKc 0.9348	264679 Syja_N 0.9292	168 (RPB1) PRK08566 0.9251	9125 hypothetical protein 0.9244	261495 Peptidase_M36 0.9213	262617 (Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein 0.9205
37376 (MYO6) MYSc 0.9195	36563 MYSc 0.9187	2941 hypothetical protein 0.9171	992 hypothetical protein 0.9167

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NhaP		NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	cl00454	174.792	1.86E-47	89 - 497	specific	223104
TM_PBP1_branched-chain-AA_like superfamily		Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC...	-	174.792	1.86E-47	89 - 497	superfamily	260432

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48886	PHATRDRAFT_48886	186395	258075	438257	Cre01.g034150.t1.1	AT1G14660.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments