1628 PRK01415Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1628	chr_1	PRK01415	2023395	2024897	-	PRK01415

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445499	Thaps1628.2, Thaps1628.3, Thaps1628.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0244

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0119	0.42	8.5 8.5

Most Highly Correlated Transcripts

34973 DPPIV_N 0.9014	9577 Trypsin_2 0.8967	4372 hypothetical protein 0.8784	22009 (Tp_CCHH21) regulator [Rayko] 0.8724	21176 FMO-like 0.8689	13308 PLN02948 0.8674
1905 hypothetical protein 0.8646	39062 SpoU 0.8613	21801 hypothetical protein 0.8594	2018 HA 0.8586

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RHOD superfamily		Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese...	-	83.0126	2.18E-19	290 - 402	superfamily	260205
PRK01415		hypothetical protein; Validated	-	96.5514	5.21E-23	163 - 436	multi-dom	167229

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	AT1G17850.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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