1725 LCMThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
1725	chr_1	LCM	2264909	2267120	-	LCM

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447641	Thaps1725.1, Thaps1725.4, Thaps1725.3, Thaps1725.2, Thaps1725.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0129

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0010	0.38	14000000 370

Most Highly Correlated Transcripts

bd870 (bd870) LRR_RI superfamily 0.8536	20975 hypothetical protein 0.8371	9650 hypothetical protein 0.814	7029 SET 0.8132	10078 hypothetical protein 0.8127	4333 hypothetical protein 0.8117
1101 hypothetical protein 0.8092	3179 WD40 superfamily 0.8058	3866 hypothetical protein 0.8034	3206 CAP10 superfamily 0.8019

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LCM		Leucine carboxyl methyltransferase; Family of leucine carboxyl methyltransferases EC:2.1.1.-. This...	cl01306	108.473	4.83E-27	366 - 500	specific	252349
LCM superfamily		Leucine carboxyl methyltransferase; Family of leucine carboxyl methyltransferases EC:2.1.1.-. This...	-	108.473	4.83E-27	366 - 500	superfamily	260876

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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