17657 HSR1_MMR1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17657 chr_17 HSR1_MMR1 338308 339981 + HSR1_MMR1

Synonyms

NCBI ID Ensembl Genomes exon ID
7442112 Thaps17657.1, Thaps17657.2, Thaps17657.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0220

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0257
 0.20

Most Highly Correlated Transcripts

12971

WD40 superfamily
0.9278

13578

SrmB
0.9216

40089

COG0478
0.9147

bd96

(bd96) eIF-3_zeta
0.9113

37786

SrmB
0.9105

31710

RIO1_euk
0.9074

36798

S_TKc
0.8953

bd1876

(bd1876) NatB_MDM20 superfamily
0.8915

36609

PRK00142
0.889

bd1709

(bd1709) NA
0.8879

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSR1_MMR1 A circularly permuted subfamily of the Ras GTPases; Human HSR1 is localized to the human MHC class... cl17249 208.625 3.32E-65 1 - 191 specific 206750
YlqF_related_GTPase superfamily Circularly permuted YlqF-related GTPases; These proteins are found in bacteria, eukaryotes, and... - 208.625 3.32E-65 1 - 191 superfamily 247803
COG1161 Predicted GTPases [General function prediction only] - 150.226 3.31E-41 2 - 320 multi-dom 224083

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19438 PHATRDRAFT_19438 241775 151645 61494 Cre16.g680944.t1.1 AT2G27200.1 321310

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005525 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

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