18104 MutY
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18104 chr_1 MutY 237091 239550 - MutY

Synonyms

NCBI ID Ensembl Genomes exon ID
7451535 Thaps18104.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0292

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0114
 0.48

Most Highly Correlated Transcripts

bd1221

(bd1221) recQ_fam
0.8769

bd935

(bd935) TFIIS_I
0.8662

262580

AdoMet_dc
0.8433

bd1465

(bd1465) PKc_like superfamily
0.842

bd1133

(bd1133) ATM1
0.8301

bd794

(bd794) NA
0.8186

bd719

(bd719) NA
0.8154

bd1863

(bd1863) NA
0.8113

268582

(DHC2) recQ_fam
0.811

263669

UvrD
0.8109

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... cl19066 152.396 1.54E-42 358 - 523 specific 238013
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 152.396 1.54E-42 358 - 523 superfamily 267419
MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] - 256.117 1.68E-77 356 - 678 multi-dom 224115

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48620 PHATRDRAFT_48620 187316 225855 75031 Cre02.g082000.t1.2 AT4G12740.1 528973

KEGG

KEGG description KEGG Pathway
Base excision repair map03410

GO Terms

GO:0003677 GO:0006284 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006284

base-excision repair

Details: 
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO Category: 
BP

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