1841 RRM1_U1A_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1841 chr_1 RRM1_U1A_like 2558995 2559934 - RRM1_U1A_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7445497 Thaps1841.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0318

Most Highly Correlated Transcripts

12899

AAA
0.892

16114

PLN02350
0.8886

20696

S_TKc
0.8862

20799

LUC7
0.8824

7356

Nudix_Hydrolase superfamily
0.8795

1132

hypothetical protein
0.8741

23410

WD40 superfamily
0.8729

21464

BTB
0.8728

17880

HD_3
0.8724

19158

GRX_PICOT_like
0.8718

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM1_U1A_like RNA recognition motif 1 in the U1A/U2B"/SNF protein family; This subfamily corresponds to... cl17169 107.614 2.90E-29 74 - 156 specific 240692
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 91.0911 2.46E-23 238 - 308 superfamily 266524
RRM2_U1A_like RNA recognition motif 2 in the U1A/U2B"/SNF protein family; This subfamily corresponds to... cl17169 91.0911 2.46E-23 238 - 308 specific 240693
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 91.0911 2.46E-23 238 - 308 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13360 PHATR_13360 272588 260548 62832 Cre13.g566700.t1.1 AT2G30260.1 484798

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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