20223 RRM_HP0827_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20223 chr_12 RRM_HP0827_like 495118 495963 - RRM_HP0827_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7447542 Thaps20223.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0453

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0012
 0.49

Most Highly Correlated Transcripts

bd174

(bd174) Tim17 superfamily
0.9167

35274

RRM_Srp1p_AtRSp31_like
0.8046

bd1944

(bd1944) Glyco_hydro_79n superfamily
0.7541

263299

hypothetical protein
0.7483

42447

RRM_SF superfamily
0.7356

bd1828

(bd1828) NA
0.7325

bd1125

(bd1125) LSm4
0.7256

31859

Sm_B
0.724

33699

TRX_family
0.7237

10873

NA
0.7228

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_HP0827_like RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins; This subfamily... cl17169 108.084 1.28E-29 163 - 239 specific 240845
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 80.35 1.52E-19 66 - 134 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 80.35 1.52E-19 66 - 134 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_8269 PHATRDRAFT_8269 219975 328567 49394 Cre09.g392350.t1.2 AT4G26650.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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