20796 Sec23_helical
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20796 chr_1 Sec23_helical 1323460 1327878 + Sec23_helical

Synonyms

NCBI ID Ensembl Genomes exon ID
7451449 Thaps20796.4, Thaps20796.1, Thaps20796.3, Thaps20796.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0248

Most Highly Correlated Transcripts

263610

COG3899
0.9181

8762

SNF2_N
0.8965

3436

SLAC1
0.8927

25135

DENN superfamily
0.8836

25356

DUF1325 superfamily
0.8795

11346

hypothetical protein
0.8795

22185

ANK
0.8777

262573

G_glu_transpept
0.8758

261357

NAD_binding_8 superfamily
0.8757

1079

hypothetical protein
0.8757

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 82.5793 3.33E-18 1076 - 1176 superfamily 252815
Sec23_helical superfamily Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to... - 82.5793 3.33E-18 1076 - 1176 superfamily 252815
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 74.8566 8.84E-16 960 - 1062 superfamily 254596
Sec23_BS superfamily Sec23/Sec24 beta-sandwich domain; Sec23/Sec24 beta-sandwich domain. - 74.8566 8.84E-16 960 - 1062 superfamily 254596

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48220 PHATRDRAFT_48220 253935 16043 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005515 GO:0006886 GO:0006888 GO:0030127 -

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0006888

ER to Golgi vesicle-mediated transport

Details: 
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO Category: 
BP

GO:0030127

COPII vesicle coat

Details: 
One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.
GO Category: 
CC

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