20998 HOOK
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20998 chr_1 HOOK 2457737 2459709 + HOOK

Synonyms

NCBI ID Ensembl Genomes exon ID
7449066 Thaps20998.1, Thaps20998.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0291
 0.48

Most Highly Correlated Transcripts

21734

DnaJ-X superfamily
0.9147

268881

Mod_r superfamily
0.9092

270222

0.8864

2674

hypothetical protein
0.8798

31845

PLN02428
0.8774

1428

hypothetical protein
0.8632

20993

hslU
0.8627

31034

cyclophilin superfamily
0.8602

39157

(RPT2) PTZ00361
0.8581

23148

PUB
0.8567

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HOOK HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic... - 113.74 19 - 554 multi-dom 253283

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45285 PHATRDRAFT_45285 178655 264418 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005509 GO:0003700 GO:0006355 GO:0008570 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008570

NA

Details: 
NA
GO Category: 
NA

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