21284 CCTThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21284	chr_2	CCT	1027030	1029367	+	CCT

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450349	Thaps21284.1, Thaps21284.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0415

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0076	0.36	820 4800

Most Highly Correlated Transcripts

263755 S_TKc 0.9103	32366 Pumilio 0.9043	31822 WD40 0.8997	21220 KU superfamily 0.8975	12899 AAA 0.8962	25288 Sec6 superfamily 0.8961
20662 CactinC_cactus 0.8955	10510 hypothetical protein 0.8948	21843 hypothetical protein 0.8929	267979 HCO3_cotransp superfamily 0.8927

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CCT superfamily		CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids...	-	74.1792	2.67E-16	611 - 655	superfamily	203407
CCT superfamily		CCT motif; This short motif is found in a number of plant proteins. It is rich in basic amino acids...	-	74.1792	2.67E-16	611 - 655	superfamily	203407

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_43891	PHATR_43891	264795	255648	Not available	Not available	Not available	288671

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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