22139 Cyt_C5_DNA_methylase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22139 chr_4 Cyt_C5_DNA_methylase superfamily 478592 480262 - Cyt_C5_DNA_methylase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447454 Thaps22139.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

22672

hypothetical protein
0.922

40341

WD40 superfamily
0.9161

21397

Nop52 superfamily
0.9135

39845

(DNA_TopoIV) PRK05560
0.913

264345

SpoU
0.9117

23887

hypothetical protein
0.9106

268880

WD40 superfamily
0.9096

40223

PLN02347
0.9064

33718

Methyltransf_4 superfamily
0.9015

21933

RNA_pol_I_A49 superfamily
0.9013

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Cyt_C5_DNA_methylase superfamily Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many... - 66.1046 2.11E-12 124 - 273 superfamily 267448

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16674 PHATRDRAFT_16674 139371 195867 Not available Cre12.g484600.t1.2 AT5G25480.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003677 GO:0006306 GO:0003886 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006306

DNA methylation

Details: 
The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
GO Category: 
BP

GO:0003886

DNA (cytosine-5-)-methyltransferase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + DNA containing cytosine = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine.
GO Category: 
MF

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