22565 UhpC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22565 chr_5 UhpC 281702 283911 - UhpC

Synonyms

NCBI ID Ensembl Genomes exon ID
7449650 Thaps22565.3, Thaps22565.1, Thaps22565.4, Thaps22565.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0203

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0146
 0.45

Most Highly Correlated Transcripts

22213

(PFK2) PFK superfamily
0.8962

270138

(GLNN) GSIII_N superfamily
0.8961

21069

Mito_carr
0.8686

411

(SCS2) PTZ00187
0.8368

20804

hypothetical protein
0.8338

1417

GpcrRhopsn4 superfamily
0.8324

264891

Glyco_hydro_30 superfamily
0.8252

28635

hypothetical protein
0.8152

20641

hypothetical protein
0.8129

3560

hypothetical protein
0.8037

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 89.6805 6.25E-20 34 - 454 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 89.6805 6.25E-20 34 - 454 superfamily 119392
UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] - 170.914 1.80E-47 16 - 454 multi-dom 225180

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43611 PHATRDRAFT_43611 187606 236894 Not available Cre12.g503000.t1.2 AT1G30560.1 561102

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005215 GO:0006810 GO:0016021 -

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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