22582 S1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22582	chr_5	S1	358037	360052	-	S1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449666	Thaps22582.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0193	0.22	0.14 75

Most Highly Correlated Transcripts

268331 WD40 0.9412	24849 (Tp_CCCH8) DnaQ_like_exo superfamily 0.9317	261462 hypothetical protein 0.9242	2772 Utp14 0.923	39022 COG2319 0.9223	37965 S1_like superfamily 0.9174
36434 DUF1253 0.9158	bd96 (bd96) eIF-3_zeta 0.9155	268735 (GPB1) WD40 0.915	23354 RNA-binding protein of the pumilio family 0.9133

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1		Ribosomal protein S1-like RNA-binding domain; Ribosomal protein S1-like RNA-binding domain.	cl09927	72.2511	1.51E-15	417 - 488	specific	197648
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	72.2511	1.51E-15	417 - 488	superfamily	263921

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47014	PHATRDRAFT_47014	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003723 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

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